– All aspects of population genetics, including MIGRATE analysis, NGS data visualization, population modelling, calculation of relevant statistics, etc.
– A user-friendly graphical interface
– Easy to understand code
– Free
– Powerful and extendable
– Data analysis integrated into one analysis
– Geographical analysis
– Extensive options for customizing
2.1 Installation of WinPop Crack Keygen software
===================================
– Open a DOS prompt and go to the WinPop Crack For Windows folder.
– Use WinPop\> to run WinPop.exe
2.2 Run WinPop on multiple Windows computers
=============================================
– Open a DOS prompt and go to the WinPop folder.
– Use WinPop\> to run WinPop.exe
2.3 Run WinPop on an administrator account
===========================================
– Open a DOS prompt and go to the WinPop folder.
– Use WinPop\> to run WinPop.exe
2.4 Data input to WinPop
=========================
– Data is stored in a MySql database. See the User Guide for the location of the database and the file names of the tables that are needed.
– Import the data using the Data Import Wizard (File\> Import). The data can be imported using several Data Flow Diagrams. For example, if each row of data represents an individual, use a cross as the driver to represent a bottleneck and a rhomboid for a geographic structure. In this case, place the MySql import tool on the top left hand corner of the diagram and drag the cross onto the rhomboid and click the “Start” button. If each row of data represents a locus (site) then use a diamond for the driver and place it on top of the diamond. Click “Add Next” and then click the “Add step” button. Use the “Bulk insert” wizard to generate a file for import into the database.
– The Import Wizard generates a map.txt file for each step. These files are stored in the ImportMap folder.
– The file path to the ImportMap folder should be modified in the KeyWords box of the Import Wizard.
2.5 WinPop application features and design principles
“The primary objective of WinPop is to assist the development of population genetics programs. A secondary objective is to provide a user-friendly interface that allows entry of statistical data and display of graphic output.
WinPop, which is licensed under the GNU General Public License (GPL), will run under Microsoft Windows OS, but it has been tested and found to run under Apple Macintosh operating systems.
”
The user is presented with four different windows to enter data.
(1) First you select the population of interest. Then the user selects the alleles to consider: autosomal (A) or Y chromosome.
(2) When specifying SNPs for consideration, the user chooses SNPs from the “Specify SNP list” window, or if only one SNP is to be considered, the user simply types the number of SNP in the “Enter SNP(s) per locus” field. For autosomal markers, there are 24 allele combinations in every SNP locus; thus, the user can type in any number from 0 to 23 for every allele pair.
(3) Each marker is specified with its position on the chromosome.
(4) User can chose to modify the default allele frequencies, recombination frequencies, or mutation frequencies.
A genetic map of the markers in the population are generated and a plot of the genetic distance is printed out.
Reception
The developers of WinPop, Tim Lark (University of California, Davis) and Janet Kelso (University of Cincinnati), were recently interviewed by Dr. Dan Graur at darwinforums.org.
Program features and output
The WinPop software allows the user to enter statistical data about populations, analyze it, and output a plot of the genetic distance of the population of interest. The WinPop program has four windows: First, the user selects the population of interest, then selects the SNP that is to be considered. Then, the user chooses whether to consider SNPs of the Y chromosome or the autosomal chromosomes. The user then specifies a list of SNPs that they wish to analyze.
WinPop has four features that can be used to specify a population. The user can:
(1) Choose one of 16 different populations (presented in the software as “World Populations”) for which the user may specify allele frequencies. If the user selects a world population, the program
77a5ca646e
Winpop was the first bioinformatics software based on the DNA Sequencing by Amplification Technology (SAT) paradigm. Winpop is intended to be a general-purpose population genetics software that can easily run on any desktop computer (Windows based) with any language that supports Visual Basic 6.0.
Although the core functionality is limited to the calculation of genetic distances (Nei’s D2), the application contains a comprehensive set of utility functions that allow for simple calculation of numbers of mutations, dendrograms, rarefaction and comparison of DNA content to levels of successional series (Figure 4). Some of the utility functions are also written in Excel (e.g. calculation of number of mutations based on mutation rate). The intent is that the functionality can be extended to additional areas of population genetics.
Features:
– General instructions on how to use the software.
– Full screen tutorial on how to use the software and an introduction to the concepts of population genetics and DNA sequencing by amplification (SAT).
– A new example of a Genetic Distance D2 calculation which is a minor revision of the D2 calculation developed in
VBA 3.0.
– Include a set of utility functions written in Excel
– An example of the use of the utility functions
– A function to calculate the number of mutations in a population.
– A function to calculate the number of generations that will be needed to achieve a certain percentage of individuals with a certain level of DNA content.
– Complete program listing with a flowchart and any updates that have been made to the software.
Versions:
– The first edition of Winpop contained only one function – the D2 calculation. This version was first released in 2002.
– The updated edition of Winpop is for Visual Basic 6.0. The previous version is no longer supported.
Changes:
– Version 2.0 added an example of a Genetic Distance D2 calculation that was developed for the
Winpop
VBA 3.0 edition.
– Version 2.1 is completely rewritten for VB 6.0
– Version 2.2 is the updated VB 6.0 edition of Winpop. The previous version 2.1 is no longer supported.
Limitations:
– The Winpop program was never intended to be a commercial product. Only limited support is available.
System Requirements:
– Winpop works on any desktop computer with Windows 98, 2000, 2003, XP and Vista.
Support:
Winpop has limited support from the author. Only queries, user comments and updates to the software will be acknowledged.
Document:
Winpop.doc
– A visual manual of the Winpop software.
Sources:
Winpop.exe
– Winpop was developed using Visual Basic 6.0 for Windows XP and the Microsoft Foundation Classes (MFC) 2.0
Windows 10 Home (64-bit)
OS X 10.11 (64-bit)
Linux 6.x (64-bit)
Intel Core 2 Duo @ 2.0 GHz or better
2 GB RAM (1 GB recommended)
Geforce GTX 470 or ATI R9 290 series or better
1280×1024 minimum display resolution
Software Requirements:
JRebel 9.0.1 (or later)
Eclipse with JRebel plugin installed
Source
Build Instructions
1.
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